| ✓ | Op. 2 | 6 Variations on an original theme in C major, J.7, op. 21 rec | – | Keyboard | – | – |
| – | Op. 3 | Sonatina for Piano 4-Hands, J.9, op. 3, no. 1 | – | Keyboard | – | – |
| ✓ | Op. 5 | 8 Variations on a ballet air from Vogler's opera 'Castor and Pollux,' J.40, op. 51 rec | – | Keyboard | – | – |
| ✓ | Op. 6 | 6 Variations on a theme from Vogler's opera 'Samori', J.43, op. 61 rec | – | Keyboard | – | – |
| ✓ | Op. 7 | 7 Variations on Bianchi's air 'Vien quà, Dorina bella,' J.53, op. 71 rec | – | Keyboard | – | – |
| ✓ | Op. 8 | Peter Schmoll und seine Nachbarn, J.8, op. 811 rec | – | Stage | – | – |
| ✓ | Op. 9 | 7 Variations on an Original Theme, J.55, op. 91 rec | – | Keyboard | – | – |
| – | Op. 10a | 6 Pieces, for piano four hands, J.81-86, op. 10a | – | Keyboard | – | – |
| – | Op. 10b | 6 Progressions Sonatas for Piano and Violin Obligato, J.99-104, op. 10b | – | Chamber | – | – |
| ✓ | Op. 10 no. 1 | Violin Sonata in F major, op. 10 no. 18 rec | – | – | – | – |
| ✓ | Op. 10 no. 2 | Violin Sonata in G major, op. 10 no. 26 rec | – | – | – | – |
| ✓ | Op. 10 no. 3 | Violin Sonata in G major, op. 10 no. 38 rec | – | – | – | – |
| ✓ | Op. 10 no. 4 | Violin Sonata in E‐flat major, op. 10 no. 46 rec | – | – | – | – |
| ✓ | Op. 10 no. 5 | Violin Sonata in A major, op. 10 no. 54 rec | – | – | – | – |
| ✓ | Op. 10 no. 6 | Violin Sonata in C major, op. 10 no. 69 rec | – | – | – | – |
| ✓ | Op. 11 | Piano Concerto no. 1 in C major, J.98, op. 11 | – | Orchestral | – | – |
| ✓ | Op. 12 | Momento Capriccioso, op. 124 rec | – | Keyboard | – | – |
| ✓ | Op. 13 | Wiegenlied, song for voice and guitar, J.96, op. 13, no. 2, "Schlaf, Herzenssöhnchen" | – | Vocal | – | – |
| ✓ | Op. 13 no. 1 | Die Schäferstunde, op. 13 no. 1, J. 911 rec | – | – | – | – |
| ✓ | Op. 13 no. 2 | Wiegenlied, op. 13 no. 2, J. 962 rec | – | – | – | – |
| ✓ | Op. 13 no. 3 | Liebeszauber, op. 13 no. 3, J. 521 rec | – | – | – | – |
| ✓ | Op. 13 no. 4 | An den Mond, op. 13 no. 4, J. 721 rec | – | – | – | – |
| ✓ | Op. 13 no. 5 | Die Zeit, op. 13 no. 5, J. 976 rec | – | – | – | – |
| ✓ | Op. 15 | Was zieht zu deinem Zauberkreise, song for voice and piano, J.68, op. 15, no. 4 | – | Vocal | – | – |
| ✓ | Op. 15 no. 1 | Meine Lieder, meine Sänge, op. 15 no. 1, J. 733 rec | – | – | – | – |
| ✓ | Op. 15 no. 2 | Klage, op. 15 no. 2, J. 625 rec | – | – | – | – |
| ✓ | Op. 15 no. 3 | Der kleine Fritz an seine Freunde, op. 15 no. 3, J. 743 rec | – | – | – | – |
| ✓ | Op. 15 no. 4 | Was zieht zu deinem Zauberkreise, op. 15 no. 4, J. 683 rec | – | – | – | – |
| ✓ | Op. 15 no. 5 | Das Röschen, op. 15 no. 5, J. 673 rec | – | – | – | – |
| ✓ | Op. 15 no. 6 | Er an Sie, op. 15 no. 6, J. 571 rec | – | – | – | – |
| ✓ | Op. 19 | Symphony no. 1 in C major, J.50, op. 199 rec | – | Orchestral | – | – |
| – | Op. 20 | Grand Pot-pourri in D major, concert piece for cello and orchestra, J.64, op. 20 | – | Orchestral | – | – |
| ✓ | Op. 21 | Grande Polonaise in E flat major, J.59, op. 211 rec | – | Keyboard | – | – |
| – | Op. 22 | 9 Variations in D minor on a Norwegian Air, for violin and piano, op. 22, J.61 | – | Chamber | – | – |
| ✓ | Op. 24 | Piano Sonata no. 1, op. 2426 rec | – | Keyboard | – | – |
| ✓ | Op. 25 | Über die Berge, song for voice and guitar, J.110, op. 25, no. 2 | – | Vocal | – | – |
| ✓ | Op. 26 | Concertino for Clarinet and Orchestra in E flat major, J.109, op. 2642 rec | – | Orchestral | – | – |
| ✓ | Op. 27 | The Ruler of the Spirits Overture, op. 2713 rec | – | Orchestral | – | – |
| ✓ | Op. 28 | 7 Variations on a theme from Méhul's opera 'Joseph,' J.141, op. 281 rec | – | Keyboard | – | – |
| ✓ | Op. 29 | Ninfe se liete, J.124, op. 29, no. 21 rec | – | Vocal | – | – |
| – | Op. 29 no. 1 | Canzonetta, op. 29, no. 1 J. 108: Weh! Dass geschieden | – | – | – | – |
| – | Op. 29 no. 2 | Canzonetta, op. 29, no. 2 J. 124: Heitere Tage | – | – | – | – |
| – | Op. 29 no. 3 | Canzonetta, op. 29, no. 3 J. 120: In euren Blicken | – | – | – | – |
| ✓ | Op. 30 | Reigen, song for voice and piano, J.159, op. 30, no. 5, "Sagt mir an, was schmunzeit ihr" | – | Vocal | – | – |
| ✓ | Op. 30 no. 2 | Es stürmt auf der Flur, op. 30 Nr. 21 rec | – | – | – | – |
| ✓ | Op. 30 no. 3 | Unbefangenheit, op. 30 Nr. 32 rec | – | – | – | – |
| ✓ | Op. 30 no. 4 | Minnelied, op. 30 Nr. 41 rec | – | – | – | – |
| ✓ | Op. 30 no. 6 | Sind es Schmerzen, sind es Freuden op. 30 Nr. 62 rec | – | – | – | – |
| ✓ | Op. 31 | Va, ti consola, for 2 sopranos and piano, J.125, op. 31, no. 2 | – | Vocal | – | – |
| ✓ | Op. 31 no. 2 | Duet, op. 31 no. 2 "Va, ti consola"1 rec | – | – | – | – |
| ✓ | Op. 31 no. 3 | Duet, op. 31 no. 3 "Se il mio ben"2 rec | – | – | – | – |
| ✓ | Op. 32 | Piano Concerto no. 2 in E flat major, J.155, op. 32 | – | Orchestral | – | – |
| ✓ | Op. 33 | 7 Variations on a Theme from Silvana for clarinet and piano, J.128, op. 3314 rec | – | Chamber | – | – |
| ✓ | Op. 34 | Clarinet Quintet, J.182, op. 3496 rec | – | Chamber | – | – |
| ✓ | Op. 35 | Andante and Hungarian Rondo, op. 3513 rec | – | Orchestral | – | – |
| ✓ | Op. 37 | Turandot, incidental music, J.75, op. 379 rec | – | Orchestral | – | – |
| ✓ | Op. 39 | Piano Sonata no. 2 in A flat major, J.199, op. 3949 rec | – | Keyboard | – | – |
| ✓ | Op. 40 | 9 Variations on a Russian air ;Schöne Minka,' J.179, op. 402 rec | – | Keyboard | – | – |
| ✓ | Op. 41 no. 1 | Gebet während der Schlacht, op. 41 no. 11 rec | – | – | – | – |
| ✓ | Op. 42 | Lützow's wilde Jagd, partsong for 4 male voices, J.168, op. 42, no. 2, "Was glänzt" | – | Vocal | – | – |
| ✓ | Op. 45 | Concertino in E minor, for horn and orchestra, J.188, op. 4517 rec | – | Orchestral | – | – |
| ✓ | Op. 46 no. 1 | Der Leichtmüthige, op. 46 no. 12 rec | – | – | – | – |
| ✓ | Op. 46 no. 2 | Der Schwermüthige, op. 46 no. 22 rec | – | – | – | – |
| ✓ | Op. 46 no. 3 | Der Liebeswüthige, op. 46 no. 32 rec | – | – | – | – |
| – | Op. 46 no. 4 | Der Gleichmüthige, op. 46, no. 4 | – | – | – | – |
| ✓ | Op. 47 | Mein Verlangen, song for voice and piano, J.196, op. 47, no. 5, "Ach, wär' ich doch" | – | Vocal | – | – |
| ✓ | Op. 47 no. 1 | Die gefangenen Sänger, op. 47 Nr. 13 rec | – | – | – | – |
| ✓ | Op. 47 no. 2 | Die freien Sänger, op. 47 Nr. 21 rec | – | – | – | – |
| ✓ | Op. 47 no. 5 | Mein Verlangen, op. 47 Nr. 51 rec | – | – | – | – |
| ✓ | Op. 48 | Grand Duo Concertant, for clarinet and piano, op. 4854 rec | – | Chamber | – | – |
| ✓ | Op. 49 | Piano Sonata no. 3, J.206, op. 4925 rec | – | Keyboard | – | – |
| – | Op. 51 | Non paventar mia vita, scene and aria for for soprano and orchestra, J.181, op. 51 | – | Vocal | – | – |
| – | Op. 53b | Schone Ahnung ist erglommen, for 4 male voices and piano ad lib., J. 228; Op.53b, no. 2 or Op.57, no. 2, "Frühlingslied" | – | Vocal | – | – |
| – | Op. 53 no. 2 | Schöne Ahnung ist erglommen, op. 53, no. 2, "Frühlingslied" | – | – | – | – |
| ✓ | Op. 55 | 7 Variations on a Gypsy Song, J.219, op. 551 rec | – | Keyboard | – | – |
| – | Op. 57 | Schone Ahnung ist erglommen, for 4 male voices and piano ad lib., J. 228; Op.53b, no. 2 or Op.57, no. 2, "Frühlingslied" | – | Vocal | – | – |
| – | Op. 58 | Jubel-Cantate, for soloists, chorus, and orchestra, J.244, op. 58 | – | Vocal | – | – |
| ✓ | Op. 59 | Jubel-Ouvertüre, J.245, op. 5914 rec | – | Orchestral | – | – |
| ✓ | Op. 62 | Rondo Brilliant, op. 626 rec | – | Keyboard | – | – |
| ✓ | Op. 63 | Trio, for flute, cello and piano, op. 636 rec | – | Chamber | – | – |
| – | Op. 63 no. 2 | Trio g-Moll für Klavier, Flöte und Violoncello, op. 63, no. 2: Scherzo. Allegro vivace | – | – | – | – |
| – | Op. 63 no. 3 | Trio g-Moll für Klavier, Flöte und Violoncello, op. 63, no. 3: Schäfers Klage. Andante espressivo | – | – | – | – |
| – | Op. 63 no. 4 | Trio g-Moll für Klavier, Flöte und Violoncello, op. 63, no. 4: Finale. Allegro | – | – | – | – |
| ✓ | Op. 64 no. 1 | Mein Schatzerl is hübsch, op. 64 Nr. 11 rec | – | – | – | – |
| ✓ | Op. 64 no. 3 | Heimlicher Liebe Pein, op. 64 Nr. 31 rec | – | – | – | – |
| ✓ | Op. 64 no. 8 | Herzchen, mein Schätzchen, op. 64 Nr. 81 rec | – | – | – | – |
| ✓ | Op. 65 | Invitation to the Dance, op. 6533 rec | – | Keyboard | – | – |
| ✓ | Op. 66 no. 1 | Das Veilchen im Thale, op. 66 Nr. 11 rec | – | – | – | – |
| ✓ | Op. 66 no. 3 | Ich denke dein, op. 66 Nr. 32 rec | – | – | – | – |
| ✓ | Op. 70 | Piano Sonata no. 4 in E minor, J. 287, op. 7020 rec | – | Keyboard | – | – |
| ✓ | Op. 71 | Das Mädchen an das erste Schneeglöckchen, song for voice and piano, J.267, op. 71, no. 3, "Was bricht hervor" | – | Vocal | – | – |
| ✓ | Op. 72 | Polacca brillante, J.268, op. 72, "L'Hilarité"1 rec | – | Keyboard | – | – |
| ✓ | Op. 73 | Clarinet Concerto no. 1 in F minor, J.114, op. 73119 rec | – | Orchestral | – | – |
| ✓ | Op. 74 | Clarinet Concerto no. 2 in E flat major, J.118, op. 74103 rec | – | Orchestral | – | – |
| ✓ | Op. 75 | Bassoon Concerto in F major, J.127, op. 7549 rec | – | Orchestral | – | – |
| – | Op. 76 | Missa Sancta no. 2 in G major, for soloists, chorus and orchestra, J.251, op. 76, "Jubelmesse" | – | Vocal | – | – |
| ✓ | Op. 77 | Der Freischütz, op. 771 rec | – | Stage | – | – |
| ✓ | Op. 78 | Preciosa, for soloist, chorus and orchestra, J.279, op. 7813 rec | – | Orchestral | – | – |
| ✓ | Op. 79 | Konzertstück in F minor, for piano and orchestra, J. 282, op. 7914 rec | – | Orchestral | – | – |
| ✓ | Op. 80 no. 1 | Lied von Clotilde, op. 80 Nr. 12 rec | – | – | – | – |
| ✓ | Op. 81 | Euryanthe, op. 812 rec | – | Stage | – | – |